Research using QuB

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Lab web sites

Dr. Fred Sachs

Dr. Gabriela Popescu

Papers using QuB

Akyuz N, Altman RB, Blanchard SC, Boudker O. 2013.
Transport dynamics in a glutamate transporter homologue
Nature. 2013 Oct 3;502(7469):114-8. doi: 10.1038/nature12265.

Benndorf K, Thon S, Schulz E. 2013.
Unraveling subunit cooperativity in homotetrameric HCN2 channels
Biophys J. 2012 Nov 7;103(9):1860-9. doi: 10.1016/j.bpj.2012.09.024.

Gupta S, Purohit P, Auerbach A. 2013.
Function of interfacial prolines at the transmitter-binding sites of the neuromuscular acetylcholine receptor
J Biol Chem. 2013 May 3;288(18):12667-79. doi: 10.1074/jbc.M112.443911.

Haghighat Jahromi A, Honda M, Zimmerman SC, Spies M. 2013.
Single-molecule study of the CUG repeat-MBNL1 interaction and its inhibition by small molecules
Nucleic Acids Res. 2013 Jul;41(13):6687-97. doi: 10.1093/nar/gkt330.

Harrington L, Cheley S, Alexander LT, Knapp S, Bayley H. 2013.
Stochastic detection of Pim protein kinases reveals electrostatically enhanced association of a peptide substrate
Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):E4417-26. doi: 10.1073/pnas.1312739110.

Helms N, Kowalski M, Illes P, Riedel T. 2013.
Agonist antagonist interactions at the rapidly desensitizing P2X3 receptor
PLoS One. 2013 Nov 1;8(11):e79213. doi: 10.1371/journal.pone.0079213.

Lewis R, Feetham CH, Gentles L, Penny J, Tregilgas L, Tohami W, Mobasheri A, Barrett-Jolley R. 2013.
Benzamil sensitive ion channels contribute to volume regulation in canine chondrocytes
Br J Pharmacol. 2013 Apr;168(7):1584-96. doi: 10.1111/j.1476-5381.2012.02185.x.

Maki BA, Cole R, Popescu GK. 2013.
Two serine residues on GluN2A C-terminal tails control NMDA receptor current decay times
Channels (Austin). 2013 Mar-Apr;7(2):126-32. doi: 10.4161/chan.23968.

Morales P, Garneau L, Klein H, Lavoie MF, Parent L, Sauvé R. 2013.
Contribution of the KCa3.1 channel-calmodulin interactions to the regulation of the KCa3.1 gating process
J Gen Physiol. 2013 Jul;142(1):37-60. doi: 10.1085/jgp.201210933.

Mukhtasimova N, Sine SM. 2013.
Nicotinic receptor transduction zone: invariant arginine couples to multiple electron-rich residues Biophys J. 2013 Jan 22;104(2):355-67. doi: 10.1016/j.bpj.2012.12.013.

Nadin BM, Pfaffinger PJ. 2013.
A new TASK for Dipeptidyl Peptidase-like Protein 6
PLoS One. 2013 Apr 9;8(4):e60831. doi: 10.1371/journal.pone.0060831.

Pfaffinger PJ. 2013.
A conserved pre-block interaction motif regulates potassium channel activation and N-type inactivation
PLoS One. 2013 Nov 13;8(11):e79891. doi: 10.1371/journal.pone.0079891

Posson DJ, McCoy JG, Nimigean CM. 2013.
The voltage-dependent gate in MthK potassium channels is located at the selectivity filter
Nat Struct Mol Biol. 2013 Feb;20(2):159-66. doi: 10.1038/nsmb.2473.

Purohit P, Auerbach A. 2013.
Loop C and the mechanism of acetylcholine receptor-channel gating
J Gen Physiol. 2013 Apr;141(4):467-78. doi: 10.1085/jgp.201210946.

Sikor M, Mapa K, von Voithenberg LV, Mokranjac D, Lamb DC. 2013.
Real-time observation of the conformational dynamics of mitochondrial Hsp70 by spFRET
EMBO J. 2013 May 29;32(11):1639-49. doi: 10.1038/emboj.2013.89.

Wang H, Schupp M, Zurborg S, Heppenstall PA. 2013.
Residues in the pore region of Drosophila transient receptor potential A1 dictate sensitivity to thermal stimuli
J Physiol. 2013 Jan 1;591(Pt 1):185-201. doi: 10.1113/jphysiol.2012.242842.

Wang W, Luo J, Hou P, Yang Y, Xiao F, Yuchi M, Qu A, Wang L, Ding J. 2013
Native gating behavior of ion channels in neurons with null-deviation modeling
PLoS One. 2013 Oct 25;8(10):e77105. doi: 10.1371/journal.pone.0077105.

Werry D, Eldstrom J, Wang Z, Fedida D. 2013
Single-channel basis for the slow activation of the repolarizing cardiac potassium current, I(Ks)
Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):E996-1005. doi: 10.1073/pnas.1214875110.

Zhang X, Ma L, Zhang Y. 2013
High-resolution optical tweezers for single-molecule manipulation
Yale J Biol Med. 2013 Sep 20;86(3):367-83.

Zheng J. 2013.
Molecular mechanism of TRP channels Compr Physiol. 2013 Jan;3(1):221-42. doi: 10.1002/cphy.c120001.

Gao Y, Zorman S, Gundersen G, Xi Z, Ma L, Sirinakis G, Rothman JE, Zhang Y. 2012.
Single reconstituted neuronal SNARE complexes zipper in three distinct stages
Science. 2012 Sep 14;337(6100):1340-3. doi: 10.1126/science.1224492.

EndNote Bibliography for citations below only: File:QuB Bibliography.enl

Amico-Ruvio, S.A., Meaghan A Paganelli, Jason M Myers, and Gabriela K Popescu. 2012.
Ifenprodil Effects on GluN2B-containing Glutamate Receptors
Mol Pharmacol. 82:1074-81

An, N., Aaron M. Fleming, Henry S. White1, and Cynthia J. Burrows. 2012.
Crown ether–electrolyte interactions permit nanopore detection of individual DNA abasic sites in single molecules
PNAS July 17, 2012 vol. 109 no. 29 11504-11509

Beyder, A., Strege, P. R., Reyes, S., Bernard, C. E., Terzic, A., Makielski, J., Ackerman, M. J., Farrugia, G. (2012),
Ranolazine Decreases Mechanosensitivity of the Voltage-Gated Sodium Ion Channel NaV1.5: A Novel Mechanism of Drug Action.
AHA journals: Circulation. 2012; 125: 2698-2706 doi: 10.1161/​CIRCULATIONAHA.112.094714.

Bhatt, J.M., Anand Prakash, Pratyush S Suryavanshi, and Shashank Manohar Dravid. 2012.
Effect of Ifenprodil on GluN1/GluN2B NMDA Receptor Gating
Mol Pharmacol. 83:9-21

Boersma, A. J., Brain, K. L., Bayley, H. (2012),
Real-Time Stochastic Detection of Multiple Neurotransmitters with a Protein Nanopore.
ACS Nano, Article ASAP, DOI: 10.1021/nn301125y.

Borschel, W.F., Jason M. Myers, Eileen M. Kasperek, Thomas P. Smith, Nicholas M. Graziane, Linda M. Nowak, and Gabriela K Popescu. 2012.
Gating Reaction Mechanism of Neuronal NMDA Receptors
J Neurophysiol. 108:3105-15

Chen, C., Greenberg, M.J., Laakso, J.M., Ostap, E.M., Goldman, Y.E., and Shuman, H. 2012.
Kinetic schemes for post-synchronized single molecule dynamics
Biophysical Journal 102 (6), pp. L23-L25

Chen, Q., Shu Diao and Chi Wu. 2012.
How does a supercoiled DNA chain pass through a small conical glass pore?
Soft Matter 8:5451-5458

Choi K-H, Licht S (2012)
ATP-Sensitive Potassium Channels Exhibit Variance in the Number of Open Channels below the Limit Predicted for Identical and Independent Gating.
PLoS ONE 7(5): e37399. doi:10.1371/journal.pone.0037399

Cymes, G.D., and Grosman, C. 2012.
The unanticipated complexity of the selectivity-filter glutamates of nicotinic receptors
Nature Chemical Biology 8 (12), pp. 975-981

Fernández, J.A., Roman Skryma, Gabriel Bidaux, Karl L. Magleby, C. Norman Scholfield, J. Graham McGeown, Natalia Prevarskaya, and Alexander V. Zholos. 2012.
Short Isoforms of the Cold Receptor TRPM8 Inhibit Channel Gating by Mimicking Heat Action Rather than Chemical Inhibitors
J Biol Chem. 2012 January 27; 287(5): 2963–2970. Published online 2011 November 28. doi: 10.1074/jbc.M111.272823

Gimenez-Cassina, A., Martinez-Francois, J. R., Fisher, J. K., Szlyk, B., Polak, K., Wiwczar, J., Tanner, G. R., Lutas, A., Yellen, G., Danial, N. N. (2012),
BAD-Dependent Regulation of Fuel Metabolism and KATPChannel Activity Confers Resistance to Epileptic Seizures.
Neuron Volume 74, Issue 4, 24 May 2012, Pages 719–730.

Gottlieb, P.A., Chilman Bae and Frederick Sachs. 2012.
Gating the mechanical channel Piezo1: A comparison between whole-cell and patch recording
Channels (Austin). 2012 Jul-Aug;6(4):282-9. doi: 10.4161/chan.21064. Epub 2012 Jul 1

Hans, M., Wilhelm, M., Swandulla, D. (2012),
Menthol Suppresses Nicotinic Acetylcholine Receptor Functioning in Sensory Neurons via Allosteric Modulation.
Chem. Senses (2012) doi: 10.1093/chemse/bjr128 First published online: January 25, 2012.

Jadey, S., and Anthony Auerbach. 2012.
An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors
J Gen Physiol. 2012 July; 140(1): 17–28. doi: 10.1085/jgp.201210801

Jerng HH, Pfaffinger PJ (2012)
Incorporation of DPP6a and DPP6K Variants in Ternary Kv4 Channel Complex Reconstitutes Properties of A-type K Current in Rat Cerebellar Granule Cells.
PLoS ONE 7(6): e38205. doi:10.1371/journal.pone.0038205

Jha, A., Shaweta Gupta, Shoshanna N Zucker, and Anthony Auerbach. 2012.
The energetic consequences of loop 9 gating motions in acetylcholine receptor-channels
J Physiol. 2012 January 1; 590(Pt 1): 119–129. Published online 2011 October 24. doi: 10.1113/jphysiol.2011.213892

Jin, Q., Aaron M. Fleming, Cynthia J. Burrows, and Henry S. White. 2012.
Unzipping Kinetics of Duplex DNA Containing Oxidized Lesions in an α-Hemolysin Nanopore
J. Am. Chem. Soc., 2012, 134 (26), pp 11006–11011

Kleene, N.K., and Steven J Kleene. 2012.
A method for measuring electrical signals in a primary cilium
Cilia 2012, 1:17

Liu, X., Tan, X., Yang, Y., Zeng, X., Tang, X. (2012),
Propofol increases the Ca2+ sensitivity of BKCa in the cerebral arterial smooth muscle cells of mice.
Acta Pharmacologica Sinica (2012) 33: 19–26; doi: 10.1038/aps.2011.134; published online 21 Nov 2011.

Maki, B.A., Teresa K. Aman, Stacy A. Amico-Ruvio, Cassandra L. Kussius, and Gabriela K. Popescu. 2012.
C-terminal Domains of N-Methyl-d-aspartic Acid Receptor Modulate Unitary Channel Conductance and Gating
J Biol Chem. 2012 October 19; 287(43): 36071–36080. Published online 2012 September 4. doi: 10.1074/jbc.M112.390013

McGuire, H., Mark R. P. Aurousseau, Derek Bowie, and Rikard Blunck. 2012
Automating single subunit counting of membrane proteins in mammalian cells
J Biol Chem. 2012 Oct 19;287(43):35912-21

McKinnon NK, Bali M, Akabas MH (2012)
Length and Amino Acid Sequence of Peptides Substituted for the 5-HT3A Receptor M3M4 Loop May Affect Channel Expression and Desensitization.
PLoS ONE 7(4): e35563. doi:10.1371/journal.pone.0035563

McKay, B.E., Reza Tadayonnejad, Dustin M. Anderson, Jordan D. T. Engbers, Fernando R. Fernandez, Mircea Iftinca, and Ray W. Turner . 2012.
Establishing In Vivo-Like Activity in Rat Cerebellar Cells Maintained In Vitro
Isolated Central Nervous System Circuits Neuromethods Volume 73, 2012, pp 233-262

Mukherjee, S., N. Lowri Thomas, and Alan J. Williams. 2012.
A mechanistic description of gating of the human cardiac ryanodine receptor in a regulated minimal environment
J Gen Physiol. 2012 August; 140(2): 139–158. doi: 10.1085/jgp.201110706

Murthy, S.E., Tamer Shogan, Jessica C. Page, Eileen M. Kasperek, and Gabriela K. Popescu. 2012.
Probing the activation sequence of NMDA receptors with lurcher mutations
JGP vol. 140 no. 3 267-277

Nayak, T., Purohit, P. G., Auerbach, A. (2012)
The intrinsic energy of the gating isomerization of a neuromuscular acetylcholine receptor channel.
JGP vol. 139 no. 5 349-358.

Popescu, G.K. 2012.
Modes of glutamate receptor gating
J Physiol. 2012 January 1; 590(Pt 1): 73–91. Published online 2011 November 21. doi: 10.1113/jphysiol.2011.223750

Posson, D.J., Jason G McCoy, and Crina M Nimigean. 2013.
The voltage-dependent gate in MthK potassium channels is located at the selectivity filter
Nature Structural & Molecular Biology 20:159–166

Pressé, S., Julian Lee, and Ken A. Dill. 2012.
Extracting Conformational Memory from Single-Molecule Kinetic Data
J. Phys. Chem. B, 2013, 117 (2), pp 495–502 DOI: 10.1021/jp309420u

Radicke, S., T. Riedel, D. Cotella, K. Turnow, U. Ravens, M. Schaefer, and E. Wettwer. 2012.
Accessory subunits alter the temperature sensitivity of Kv4.3 channel complexes
Journal of Molecular and Cellular Cardiology Volume 56, March 2013, Pages 8–18

Raillon, C., P. Granjon, M. Graf, L. J. Steinbock and A. Radenovic. 2012.
Fast and automatic processing of multi-level events in nanopore translocation experiments
Nanoscale, 2012,4, 4916-4924

Riedel, T., Weise, S., Leichsenring, A., Illes, P. (2012),
Effects of Nucleotide Analogues at the P2X3 Receptor and its Mutants Identify the Agonist Binding Pouch.
Molecular Pharmacology April 11, 2012 mol.112.077818.

Rotem, D., Lakmal Jayasinghe, Maria Salichou, and Hagan Bayley. 2012.
Protein Detection by Nanopores Equipped with Aptamers
J. Am. Chem. Soc., 2012, 134 (5), pp 2781–2787

Santos, J.S., Guillermo A. Asmar-Rovira, Gye Won Han, Wei Liu, Ruhma Syeda, Vadim Cherezov, Kent A. Baker, Raymond C. Stevens and Mauricio Montal. 2012.
Crystal Structure of a Voltage-gated K+ Channel Pore Module in a Closed State in Lipid Membranes
December 14, 2012 The Journal of Biological Chemistry, 287, 43063-43070.

Shen, X-M., Joan M. Brengman, Steven M. Sine, and Andrew G. Engel. 2012.
Myasthenic syndrome AChRα C-loop mutant disrupts initiation of channel gating
J Clin Invest. 2012 July 2; 122(7): 2613–2621. Published online 2012 June 25. doi: 10.1172/JCI63415

Siekmann, I., James Sneyd, and Edmund J. Crampin. 2012.
MCMC Can Detect Nonidentifiable Models
Biophysical Journal Volume 103, Issue 11, 5 December 2012, Pages 2275–2286

Siekmann, I., Larry E. Wagner, II, David Yule, Edmund J. Crampin, and James Sneyd. 2012.
A Kinetic Model for Type I and II IP3R Accounting for Mode Changes
Biophys J. 2012 August 22; 103(4): 658–668. doi: 10.1016/j.bpj.2012.07.016

Sine, S.M. 2012.
Physiol Rev. Author manuscript; available in PMC 2012 November 5. Published in final edited form as: Physiol Rev. 2012 July; 92(3): 1189–1234. doi: 10.1152/physrev.00015.2011

Stelmashenko. O., Ulyana Lalo, Yue Yang, Laricia Bragg, R. Alan North, and Vincent Compan. 2012.
Activation of Trimeric P2X2 Receptors by Fewer than Three ATP Molecules
Molecular Pharmacology October 2012 vol. 82 no. 4 760-766

Syeda, R., Jose S. Santos, Mauricio Montal, and Hagan Bayley. 2012.
Tetrameric assembly of KvLm K+ channels with defined numbers of voltage sensors
Proc Natl Acad Sci U S A. 2012 October 16; 109(42): 16917-16922. Published online 2012 September 27. doi: 10.1073/pnas.1205592109

Tomaiuolo, M., Richard Bertram, Gareth Leng, and Joël Tabak. 2012.
Models of Electrical Activity: Calibration and Prediction Testing on the Same Cell
Biophysical Journal Volume 103, Issue 9, 7 November 2012, Pages 2021–2032

Thomas, N.L., and Alan J. Williams. 2012.
Pharmacology of ryanodine receptors and Ca2+-induced Ca2+ release
Wiley Interdisciplinary Reviews: Membrane Transport and Signaling Volume 1, Issue 4, pages 383–397, July/August 2012

Ullah, G., Don-On Daniel Mak, and John E. Pearson. 2012.
A data-driven model of a modal gated ion channel: The inositol 1,4,5-trisphosphate receptor in insect Sf9 cells
J Gen Physiol. 2012 August; 140(2): 159–173. doi: 10.1085/jgp.201110753

Vais, H., J.K. Foskett, Ullah, G., Pearson, J.E., Mak, D.D. 2012.
Permeant calcium ion feed-through regulation of single inositol 1,4,5-trisphosphate receptor channel gating
Journal of General Physiology 140 (6), pp. 697-716

Vance, K.M., Kasper B Hansen, and Stephen F Traynelis. 2012.
GluN1 splice variant control of GluN1/GluN2D NMDA receptors
J Physiol. 2012 August 15; 590(Pt 16): 3857–3875. Published online 2012 May 28. doi: 10.1113/jphysiol.2012.234062

Wang, W., Feng Xiao, Xuhui Zeng, Jing Yao, Ming Yuchi, and Jiuping Ding. 2012.
Optimal Estimation of Ion-Channel Kinetics from Macroscopic Currents
PLoS One. 2012; 7(4): e35208. Published online 2012 April 20. doi: 10.1371/journal.pone.0035208

Webster, R., Maxwell, S., Spearman, H., Tai, K., Beckstein, O., Sansom, M., Beeson, D. (2012),
A novel congenital myasthenic syndrome due to decreased acetylcholine receptor ion-channel conductance.
Brain (2012) doi: 10.1093/brain/aws016 First published online: March 1, 2012.

Xi, Z., Gao, Y., Sirinakis, G., Guo, H., and Zhang, Y. 2012.
Single-molecule observation of helix staggering, sliding, and coiled coil misfolding
Proceedings of the National Academy of Sciences of the United States of America 109 (15), pp. 5711-5716

Yang, J., and John E. Pearson. 2012.
Origins of concentration dependence of waiting times for single-molecule fluorescence binding
J Chem Phys. 2012 June 28; 136(24): 244506. Published online 2012 June 27. doi: 10.1063/1.4729947

Asandei, A., Apetrei, A. and Luchian, T. (2011),
Uni-molecular detection and quantification of selected β-lactam antibiotics with a hybrid α-hemolysin protein pore.
J. Mol. Recognit., 24: 199–207. doi: 10.1002/jmr.1038

Bae, C., Sachs, F., Gottlieb, P. A. (2011),
The Mechanosensitive Ion Channel Piezo1 Is Inhibited by the Peptide GsMTx4.
Biochemistry, 2011, 50 (29), pp 6295–6300.

Barnett, W. and Cymbalyuk, G. (2011)
Hybrid Systems Analysis: Real-Time Systems for Design and Prototyping of Neural Interfaces and Prostheses,
in Biohybrid Systems: Nerves, Interfaces, and Machines (ed R. Jung), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. doi: 10.1002/9783527639366.ch7

Bodnar, M., Wang, H., Riedel, T., Hintze, S., Kato, E., Fallah, G., Groger-Arndt, H., Giniatullin, R., Grohmann, M., Hausmann, R., Schmalzing, G., Illes, P., Rubini, P. (2011),
Amino Acid Residues Constituting the Agonist Binding Site of the Human P2X3 Receptor.
The Journal of Biological Chemistry, 286, 2739-2749.

Borschel, W. F., Murthy, S. E., Kasperek, E. M., Popescu, G. K. (2011),
NMDA receptor activation requires remodelling of intersubunit contacts within ligand-binding heterodimers.
Nature Communications 2:498 doi:10.1038/ncomms1512.

Corradi, J., Andersen, N., Bouzat, C. (2011),
A Novel Mechanism of Modulation of 5-HT3A Receptors by Hydrocortisone.
Biophys J. 2011 January 5; 100(1): 42–51. doi: 10.1016/j.bpj.2010.10.046.

Csanady, L., Vergani, P., Gulyas-Kovacs, A., Gadsby, D. C. (2011),
Electrophysiological, Biochemical, and Bioinformatic Methods for Studying CFTR Channel Gating and Its Regulation.
Methods in Molecular Biology, 2011, Volume 741, Part 5, 443-469, DOI: 10.1007/978-1-61779-117-8_28.

Cymes, G. D. and Grosman, C. (2011),
Estimating the pKa values of basic and acidic side chains in ion channels using electrophysiological recordings: A robust approach to an elusive problem.
Proteins, 79: 3485–3493. doi: 10.1002/prot.23087

de Zoysa, R. S. S., Krishantha, D. M. M., Zhao, Q., Gupta, J. and Guan, X. (2011),
Translocation of single-stranded DNA through the α-hemolysin protein nanopore in acidic solutions.
ELECTROPHORESIS, 32: 3034–3041. doi: 10.1002/elps.201100216

El Karim, I. A., Linden, G. J., Curtis, T. M., About, I., McGahon, M. K., Irwin, C. R., Lundy, F. T. (2011),
Human odontoblasts express functional thermo-sensitive TRP channels: Implications for dentin sensitivity.
Pain Volume 152, Issue 10, October 2011, Pages 2211–2223

Fernandez, J. A., Skryma, R., Bidaux, G., Magleby, K. L., Scholfield, C. N., McGeown, J. G., Preverskaya, N., Zholos, A. V. (2011),
Voltage- and cold-dependent gating of single TRPM8 ion channels.
JGP vol. 137 no. 2 173-195.

Gupta, S., Auerbach, A. (2011),
Mapping Heat Exchange in an Allosteric Protein.
Biophys J. 2011 February 16; 100(4): 904–911. doi: 10.1016/j.bpj.2010.12.3739.

Hooper, R. and Prinz, A. A. (2011)
Dynamic Clamp in Biomimetic and Biohybrid Living-Hardware Systems,
in Biohybrid Systems: Nerves, Interfaces, and Machines (ed R. Jung), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. doi: 10.1002/9783527639366.ch5

Jones, P. L., Pask, G. M., Rinker, D. C., Zweibel, L. J. (2011),
Functional agonism of insect odorant receptor ion channels.
PNAS May 24, 2011 vol. 108 no. 21 8821-8825.

Laube, M., Kuppers, E., Thome, U. H. (2011),
Modulation of Sodium Transport in Alveolar Epithelial Cells by Estradiol and Progesterone.
Pediatric Research (2011) 69, 200–205; doi:10.1203/PDR.0b013e3182070ec8.

Li, P., McCollum, M., Bracamontes, J., Steinbach, J. H., Akk, G. (2011),
Functional Characterization of the α5(Asn398) Variant Associated with Risk for Nicotine Dependence in the α3β4α5 Nicotinic Receptor.
Molecular Pharmacology November 2011 vol. 80 no. 5 818-827.

Li, P., Ann, J. and Akk, G. (2011),
Activation and modulation of human α4β2 nicotinic acetylcholine receptors by the neonicotinoids clothianidin and imidacloprid.
J. Neurosci. Res., 89: 1295–1301. doi: 10.1002/jnr.22644

Li, W., Aldrich, R. W. (2011),
Electrostatic influences of charged inner pore residues on the conductance and gating of small conductance Ca2+ activated K+ channels.
PNAS April 12, 2011 vol. 108 no. 15 5946-5953.

O'Toole, K. K., Jenkins, A. (2011),
Discrete M3-M4 Intracellular Loop Subdomains Control Specific Aspects of γ-Aminobutyric Acid Type A Receptor Function.
The Journal of Biological Chemistry, 286, 37990-37999.

Poon, K., Ahmed, A. H., Nowak, L. M., Oswald, R. E. (2011),
Mechanisms of Modal Activation of GluA3 Receptors.
Molecular Pharmacology July 2011 vol. 80 no. 1 49-59.

Purohit, P., Auerbach, A. (2011),
Glycine Hinges with Opposing Actions at the Acetylcholine Receptor-Channel Transmitter Binding Site.
Molecular Pharmacology March 2011 vol. 79 no. 3 351-359.

Sattigeri, P.S., Ramamurthy, K.N., Thiagarajan, J.J., Goryll, M., Spanias, A., Thornton, T. (2011),
Analyte detection using an ion-channel sensor array.
Digital Signal Processing (DSP), 2011 17th International in Proc SSPD 2011.

Siekmann, I., Wagner II, L. E., Yule, D., Fox, C., Bryant, D., Crampin, E. J., Sneyd, J. (2011),
MCMC Estimation of Markov Models for Ion Channels.
Biophysical Journal Volume 100, Issue 8, 20 April 2011, Pages 1919–1929.

So, E. C., Wu, K. C., Liang, C., Chen, J., Wu, S. (2011),
Evidence for activation of BKCachannels by a known inhibitor of focal adhesion kinase, PF573228.
Life Sciences Volume 89, Issues 19–20, 7 November 2011, Pages 691–701.

Sung, R. J., Lo, C., Hsiao, P. Y., Tien, H. (2011),
Targeting intracellular calcium cycling in catecholaminergic polymorphic ventricular tachycardia: a theoretical investigation.
AJP - Heart October 1, 2011 vol. 301 no. 4 H1625-H1638.

Tabak, J., Tomaiuolo, M., Gonzalez-Iglesias, A. E., Milescu, L. S., Bertram, R. (2011),
Fast-Activating Voltage- and Calcium-Dependent Potassium (BK) Conductance Promotes Bursting in Pituitary Cells: A Dynamic Clamp Study.
The Journal of Neuroscience, 16 November 2011, 31(46): 16855-16863; doi: 10.1523/​JNEUROSCI.3235-11.2011.

Talukder, I., Wollmuth, L. P. (2011),
Local constraints in either the GluN1 or GluN2 subunit equally impair NMDA receptor pore opening.
JGP vol. 138 no. 2 179-194.

Tan, X., Yang, Y., Cheng, J., Li, P., Inoue, I., Zeng, X. (2011),
Unique action of sodium tanshinone II-A sulfonate (DS-201) on the Ca2+ dependent BKCa activation in mouse cerebral arterial smooth muscle cells.
European Journal of Pharmacology Volume 656, Issues 1–3, 10 April 2011, Pages 27–32.

Tripathi, P. K., Cardenas, C. G., Cardenas, C. A., Scroggs, R. S. (2011),
Up-regulation of tetrodotoxin-sensitive sodium currents by prostaglandin E2 in type-4 rat dorsal root ganglion cells.
Neuroscience Volume 185, 30 June 2011, Pages 14–26.

Beyder, A., Rae, J. L., Bernard, C., Strege, P. R., Sachs, F., Farrugia, G. (2010),
Mechanosensitivity of Nav1.5, a voltage-sensitive sodium channel.
The Journal of Physiology Volume 588, Issue 24, pages 4969–4985, December 2010.

Blanco, M., Walter, N. G. (2010),
Analysis of Complex Single-Molecule FRET Time Trajectories.
Methods in Enzymology Volume 472, 2010, Pages 153–178.

Bruhova, I., Auerbach, A. (2010),
Subunit Symmetry at the Extracellular Domain-Transmembrane Domain Interface in Acetylcholine Receptor Channel Gating.
The Journal of Biological Chemistry, 285, 38898-38904.

Cadugan, D. J., Auerbach, A. (2010),
Linking the Acetylcholine Receptor-Channel Agonist-Binding Sites with the Gate.
Biophysical Journal Volume 99, Issue 3, 4 August 2010, Pages 798–807.

Chatelier, A., Zhao, J., Bois, P., Chahine, M. (2010),
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Cheung, K.-H., Mei, L., Mak, D.-O. D., Hayashi, I., Iwatsubo, T., Kang, D. E., Foskett, J. K. (2010),
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Liu, Y., Luo, J., Ren, H., Peoples, R. W., Ai, Y., Liu, L., Pang, Y., Li, Z., Han, Y., Li, C. (2008),
Inhibition of NMDA-gated ion channels by bis(7)-tacrine: Whole-cell and single-channel studies.
Neuropharmacology Volume 54, Issue 7, June 2008, Pages 1086–1094.

Milescu, L. S., Yamanishi, T., Ptak, K., Mogril, M. Z., Smith, J. C. (2008),
Real-Time Kinetic Modeling of Voltage-Gated Ion Channels Using Dynamic Clamp.
Biophysical Journal Volume 95, Issue 1, 1 July 2008, Pages 66–87

Militante, J., Ma, B., Akk, G., Steinbach, J. H. (2008),
Activation and Block of the Adult Muscle-Type Nicotinic Receptor by Physostigmine: Single-Channel Studies.
Molecular Pharmacology September 2008 vol. 74 no. 3 764-776.

Poynor, M., Eckert, R., Nussberger, S. (2008),
Dynamics of the Preprotein Translocation Channel of the Outer Membrane of Mitochondria.
Biophysical Journal Volume 95, Issue 3, 1 August 2008, Pages 1511–1522.

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Use of Calculated Cation-π Binding Energies to Predict Relative Strengths of Nicotinic Acetylcholine Receptor Agonists.
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Xie, L.-H., John, S. A., Ribalet, B. and Weiss, J. N. (2008),
Phosphatidylinositol-4,5-bisphosphate (PIP2) regulation of strong inward rectifier Kir2.1 channels: multilevel positive cooperativity.
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Zhang, W., Cho, Y., Lolis, E., Howe, J. R. (2008),
Structural and Single-Channel Results Indicate That the Rates of Ligand Binding Domain Closing and Opening Directly Impact AMPA Receptor Gating.
The Journal of Neuroscience, 23 January 2008, 28(4): 932-943; doi: 10.1523/​JNEUROSCI.3309-07.2008.

Akk G, Covey DF, Evers AS, Steinbach JH, Zorumski CF, Mennerick S. (2007)
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Tan, W., Loke, Y.H., Stein, C.A., Miller, P., Colombini, M. (2007)
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Rosen A, Bali M, Horenstein J, Akabas MH. (2007)
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Cadugan, D.J., Auerbach, A. (2007)
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Corradi, J., Spitzmaul, G., De Rosa, M.J., Costabel, M., and Bouzat, C. (2007)
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Li W, Gao SB, Lv CX, Wu Y, Guo ZH, Ding JP, Xu T. (2007)
Characterization of voltage-and Ca(2+)-activated K(+) channels in rat dorsal root ganglion neurons.
J Cell Physiol. 212(2), 348-57.

Li P, Bracamontes J, Katona BW, Covey DF, Steinbach JH, Akk G. (2007)
Natural and enantiomeric etiocholanolone interact with distinct sites on the rat alpha1beta2gamma2L GABAA receptor.
Mol Pharmacol. 71(6), 1582-90.

Mukhtasimova, N., Sine, S.M. (2007)
An intersubunit trigger of channel gating in the muscle nicotinic receptor.
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Munro, J.B., Altman, R.B., O'Connor, N., and Blanchard, S.C. (2007)
Identification of two distinct hybrid state intermediates on the ribosome.
Molecular Cell 25: 505-517

Purohit, P., Mitra, A., Auerbach, A. (2007)
A stepwise mechanism for acetylcholine receptor gating.
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Eisenman LN, Shu HJ, Akk G, Wang C, Manion BD, Kress GJ, Evers AS, Steinbach JH, Covey DF, Zorumski CF, Mennerick S. (2007)
Anticonvulsant and anesthetic effects of a fluorescent neurosteroid analog activated by visible light.
Nat Neurosci. 10(4), 523-30

Akk G, Li P, Manion BD, Evers AS, Steinbach JH. (2007)
Ethanol modulates the interaction of the endogenous neurosteroid allopregnanolone with the alpha1beta2gamma2L GABAA receptor.
Mol Pharmacol. 71(2), 461-72

Dravid, S.M., Erreger, K., Yuan, H., Nicholson, K., Le, P., Lyuboslavsky, P., Almonte, A., Murray, E., Mosely, C., Barber, J., French, A., Balster, R., Murray, T.F, Traynelis, S.F. (2007)
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Michaelevski I, Korngreen A, Lotan I. (2007)
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Jones, B.L., Whiting, P.J., Henderson, L.P. (2006)
Mechanisms of anabolic androgenic steroid inhibition of mammalian varepsilon-subunit-containing GABAA receptors
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Ionescu, L., Cheung, K-H., Vais, H., Mak, D.D., White, C., Foskett, J.K. (2006)
Graded recruitment and inactivation of single InsP3 receptor Ca2+-release channels: implications for quartal Ca2+release
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Campos De Oliveira, R.A., Barbosa, C.T.F., Consoni, L.H.A., Rodrigues, A.R.A., Varanda, W.A, Nogueira, R.A. (2006)
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Physica A 364 (15 May 2006): 13-22

Bartos, M., Rayes, D., and Bouzat, C. (2006)
Molecular determinants of pyrantel selectivity in nicotinic receptors
Molecular Pharmacology 70: 1307-1318

Cai, Z., Taddei, A., Sheppard, D.N. (2006)
Differential sensitivity of the cystic fibrosis (CF)-associated mutants G551D and G1349D to potentiators of the cystic fibrosis transmembrane conductance regulator (CFTR) Cl- channel.
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Lema, G.M., Auerbach, A. (2006)
Modes and models of GABA(A) receptor gating.
J Physiol. 572(1): 183-200.

Li P, Covey DF, Steinbach JH, Akk G. (2006)
Dual potentiating and inhibitory actions of a benz[e]indene neurosteroid analog on recombinant alpha1beta2gamma2 GABAA receptors.
Mol Pharmacol. 69(6), 2015-26

Milescu, L.S., Yildiz, A., Selvin, P.R., Sachs, F. (2006)
Maximum Likelihood Estimation of Molecular Motor Kinetics from Staircase Dwell-Time Sequences.
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Ribalet B, John SA, Xie L-H, and Weiss JN. (2006)
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Brown, A.L., Fernandez-Illescas, S.M., Liao, Z., and Goodman, M.B. (2006)
Gain-of-Function Mutations in the MEC-4 DEG/ENaC Sensory Mechanotransduction Channel Alter Gating and Drug Blockade,
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Zhang Z, Zhou Y, Ding JP, Xia XM, Lingle CJ. (2006)
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Yao J, Li H, Gan GL, Wu Y, Ding JP. (2006)
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Elenes S, Ni Y, Cymes GD, Grosman C. (2006)
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Estimating binding affinities of the nicotinic receptor for low-efficacy ligands using mixtures of agonists and two-dimensional concentration-response relationships,
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Purohit Y, Grosman C. (2006)
Block of muscle nicotinic receptors by choline suggests that the activation and desensitization gates act as distinct molecular entities,
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Mol Pharmacol. 2005 Oct;68(4):1148-55.

Akk G, Shu HJ, Wang C, Steinbach JH, Zorumski CF, Covey DF, Mennerick S. (2005)
Neurosteroid access to the GABAA receptor.
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Akk G, Steinbach JH. (2005)
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Akk G, Milescu LS, Heckmann M. (2005)
Activation of heteroliganded mouse muscle nicotinic receptors.
J Physiol. 564(Pt 2), 359-76

Anishkin, A., Chiang, C.S., Sukharev, S. (2005)
Gain-of-function mutations reveal expanded intermediate states and a sequential action of two gates in MscL.
J Gen Physiol 125(2): 155-70.

Chakrapani, S., Auerbach, A. (2005)
A speed limit for conformational change of an allosteric membrane protein.
Proc Natl Acad Sci USA 102(1): 87-92.

Gao, L., Mi, X., Paajanen, V., Wang, K., Fan, Z. (2005)
Activation-coupled inactivation in the bacterial potassium channel KcsA.
Proc Natl Acad Sci USA 102(49): 17630-5.

Milescu LS, Akk G, Sachs F. (2005)
Maximum likelihood estimation of ion channel kinetics from macroscopic currents.
Biophys J. 88(4), 2494-515

Mitra, A., Tascione, R., Auerbach, A., Licht, S. (2005)
Plasticity of acetylcholine receptor gating motions via rate-energy relationships.
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Mitra, A., Cymes, G.D., Auerbach, A. (2005)
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Proc Natl Acad Sci USA 102(42): 15069-74

Mukhtasimova, N., Free, C., Sine, S.M. (2005)
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D. Rayes, G. Spitzmaul, S. Sine and C. Bouzat (2005)
Single-channel kinetic analysis of chimeric a7-5HT3 receptors.
Molecular Pharmacology 68: 1475-83

Yang H, Zhang C, Zheng H, Xiong W, Zhou Z, Xu T, Ding JP. (2005)
A simulation study on the Ca2+-independent but voltage-dependent exocytosis and endocytosis in dorsal root ganglion neurons.
Eur Biophys J. 34(8), 1007-16.

Cymes GD, Ni Y, Grosman C. (2005)
Probing ion-channel pores one proton at a time.
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Auerbach, A. (2005)
Gating of acetylcholine receptor channels: brownian motion across a broad transition state.
Proc Natl Acad Sci USA<i> 102(5): 1408-12.

Auerbach, A., Zhou, Y. (2005)
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Raisinghani, M., Pabbidi, R.M., Premkumar, L.S. (2005)
Activation of transient receptor potential vanilloid 1 (TRPV1) by resiniferatoxin
J Physiol 567: 771-786

Smith, S.S. and Gong, Q.H. (2005)
Neurosteroid administration and withdrawal alter GABAA receptor kinetics in CA1 hippocampus of female rats
J Physiol 564: 421-436

Erreger, K., Dravid, S.M., Banke, T.G., Wyllie, D.J.A, Traynelis, S.F. (2005)
Subunit-specific gating controls rat NR1/NR2A and NR1/NR2B NMDA channel kinetics and synaptic signalling profiles
J Physiol 563: 345-358

Erreger, K., Geballe, M.T., Dravid, S.M., Snyder, J.P., Wyllie, D.J.A,, Traynelis, S.F. (2005)
Mechanism of Partial Agonism at NMDA Receptors for a Conformationally Restricted Glutamate Analog.
J Neurosci. 25(34): 7858-7866

Rayes, D., De Rosa, M.J., Bartos M., and Bouzat C. (2004)
Molecular basis of the differential sensitivity of nematode and mammalian muscle to the anthelminitic agent levamisole.
J. Biological Chemistry 279: 36372-36381

Spitzmaul, G., Corradi, J. and Bouzat, C. (2004)
Mechanistic contributions of residues in the M1 transmembrane domain of the nicotinic receptor to channel gating.
Molecular Membrane Biology 21: 39-50

Craven, M., Sergeant, G. P., Hollywood, M. A., McHale, N. G., Thornbury, K. D. (2004)
Modulation of spontaneous Ca2+-activated Cl– currents in the rabbit corpus cavernosum by the nitric oxide–cGMP pathway
J Physiol 556: 495-506

Popescu, G, Robert A, Howe JR and Auerbach A, (2004)
Reaction mechanism determines the NMDA receptor response to repetitive stimulation
Nature 430(7001): 790-793

Lee, W.Y., Sine, S.M. (2004)
Invariant aspartic Acid in muscle nicotinic receptor contributes selectively to the kinetics of agonist binding.
J Gen Physiol. 124(5): 555-67.

Banderali U., Klein H., Garneau L., Simoes M., Parent L., Sauvé R. (2004)
New insights on the voltage dependence of the KCa3.1 block by internal TBA.
J. Gen. Physiol. 124:333-348

Vaithianathan T. et al 2004
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Hollywood, M. A., Woolsey, S., Walsh, I. K., Keane, P. F., McHale, N. G., Thornbury, K. D. (2003)
T- and L-type Ca2+ currents in freshly dispersed smooth muscle cells from the human proximal urethra
J Physiol 550: 753-764

Duncan, R. K., Fuchs, P. A. (2003)
Variation in large-conductance, calcium-activated potassium channels from hair cells along the chicken basilar papilla
J Physiol 547: 357-371

Grosman C. (2003)
Free-energy landscapes of ion-channel gating are malleable: changes in the number of bound ligands are accompanied by changes in the location of the transition state in acetylcholine-receptor channels.
Biochemistry 42(50), 14977-87.

Watanabe, I., Wang, H-G., Sutachan, J.J., Zhu, J., Recio-Pinto, E., Thornhill, W.B. (2003)
Glycosylation affects rat Kv1.1 potassium channel gating by a combined surface potential and cooperative subunit interaction mechanism
J Physiol 550: 51-66

Banke, T.G., Traynelis, S.F. (2003)
Activation of NR1/NR2B NMDA receptors.
Nature Neuroscience 6: 144-152.

Cai, Z., Scott-Ward, T.S., Sheppard, D.N. (2003)
Voltage-dependent gating of the cystic fibrosis transmembrane conductance regulator Cl- channel.
J Gen Physiol. 122(5): 605-20.

Chakrapani, S., Bailey, TD, Auerbach, A. (2003)
The role of loop 5 in acetylcholine receptor gating,
J. Gen. Physiol. 122(5), 521-39

Grosman, C. (2003)
Free-energy Landscapes of Ion-channel Gating Are Malleable: changes in the number of bound ligands are accompanied by changes in the location of the transition state in acetylcholine-receptor channels.
Biochemistry 42(50): 14977-87.

Han, J., Kang, D., Kim, D. (2003)
Properties and modulation of the G protein-coupled K+ channel in rat cerebellar granule neurons: ATP versus phosphatidylinositol 4,5-bisphosphate
J Physiol. 550: 693-706.

Popescu, G. and Auerbach, A. (2003)
Modal gating of NMDA receptors and the shape of their synaptic current
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Cai, Z., Sheppard, D.N. (2002)
Phloxine B interacts with the cystic fibrosis transmembrane conductance regulator at multiple sites to modulate channel activity.
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Cymes GD, Grosman C, Auerbach A. (2002)
Structure of the transition state of gating in the acetylcholine receptor channel pore: a phi-value analysis.
Biochemistry 41(17), 5548-55.

Wu, S-N, Chen, C-C, Li, H-F, Lo, Y-K, Chen, S-A, Chiang, H-T (2002)
Stimulation of the BKca channel in cultured smooth muscle cells of human trachea by magnolol

Premkumar, L.S., Agarwal, S., and Steffen, D. (2002)
Single-channel properties of native and cloned rat vanilloid receptors
J Physiol 545: 107-117

Ding, S., Sachs, F. (2002)
Evidence for non-independent gating of P2X2 receptors expressed in Xenopus oocytes.
BMC Neurosci. 2002 Nov 6; 3:17

Simoes M., Garneau L., Klein H., Banderali U., Hobeila F., Roux B., Parent L., Sauvé R. (2002)
Cysteine mutagenesis and computer modeling of the S6 region on an intermediate conductance IKCa channel.
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Grosman, C., Auerbach, A. (2001)
The dissociation of acetylcholine from open nicotinic receptor channels.
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Two-dimensional kinetic analysis suggests nonsequential gating of mechanosensitive channels in Xenopus oocytes.
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Zhu, Y., Auerbach, A. (2001)
Na(+) occupancy and Mg(2+) block of the n-methyl-d-aspartate receptor channel.
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Kim, D., Pleumsamran, A. (2000)
Cytoplasmic unsaturated free fatty acids inhibit ATP-dependent gating of the G protein-gated K(+) channel.
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Grosman, C., Zhou, M., Auerbach, A. (2000)
Mapping the conformational wave of acetylcholine receptor channel gating.
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Grosman, C., Auerbach, A. (2000)
Kinetic, mechanistic, and structural aspects of unliganded gating of acetylcholine receptor channels: a single-channel study of second transmembrane segment 12' mutants.
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Grosman, C., Auerbach, A. (2000)
Asymmetric and independent contribution of the second transmembrane segment 12' residues to diliganded gating of acetylcholine receptor channels: a single-channel study with choline as the agonist.
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Grosman, C., Salamone, F.N., Sine, S.M., Auerbach, A. (2000)
The extracellular linker of muscle acetylcholine receptor channels is a gating control element.
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Li, J., Lester, H.A. (1999)
Single-Channel Kinetics of the Rat Olfactory Cyclic Nucleotide-Gated Channel Expressed in Xenopus Oocytes

Ding, S., Sachs, F. (1999)
Single channel properties of P2X2 purinoceptors.
J Gen Physiol. 113(5): 695-720

Sukharev,S., Sigurdson,W., Kung,C. & Sachs,F. (1999)
Energetic and spatial parameters for gating of the bacterial large conductance mechanosensitive channel, MscL.
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Kim, D., Bang, H. (1999)
Modulation of rat atrial G protein-coupled K+ channel function by phospholipids.
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Zhou, M., Engel, A.G., Auerbach, A. (1999)
Serum choline activates mutant acetylcholine receptors that cause slow channel congenital myasthenic syndromes.
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View this paper at the Biophysical Journal Site: Abstract, Full Paper

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