View source

From QuB

The action you have requested is limited to users in the group user.

You can view and copy the source of this page:

{|class="wikitable" | style="width:100%" | border=1 | cellspacing=0 |-style="text-align:center" |[[Glossary|Prev: Glossary]] |[[Outline]] |[[Research using QuB|Next: Research using QuB]] |} == Publications == Milescu, L.S., T. Yamanishi, K. Ptak, M.Z. Mogri, and J.C. Smith. 2008. [http://www.biophysj.org/cgi/content/full/95/1/66 Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp]. <i>Biophysical J</i>. <b>95(1)</b>:66-87. Milescu, L.S., A. Yildiz, P.R. Selvin, and F. Sachs. 2006. [http://www.biophysj.org/cgi/content/full/91/9/3135 Extraction of dwell-time sequences from processive molecular motor data]. <i>Biophysical J</i>. <b>91(9)</b>:3135-3150. Milescu, L.S., A. Yildiz, P.R. Selvin, and F. Sachs. 2006. [http://www.biophysj.org/cgi/content/full/91/4/1156 Maximum likelihood estimation of molecular motor kinetics from staircase data]. <i>Biophysical J</i>. <b>91(4)</b>:1156-1168. Milescu, L.S., G. Akk, and F. Sachs. 2005. [http://www.biophysj.org/cgi/content/full/88/4/2494 Maximum likelihood estimation of ion channel kinetics from macroscopic currents]. <i>Biophysical J</i>. <b>88(4)</b>:2494-2515. Li, L., Qin, F. 2004. [http://www.biophysj.org/cgi/content/full/87/3/1657 Model-Based Fitting of Single-Channel Dwell-Time Distributions] <i> Biophys J</i>. <b>87(3)</b>:1657-71. Qin, F. 2004. [http://www.biophysj.org/cgi/content/full/86/3/1488 Restoration of Single-Channel Currents Using the Segmental k-Means Method Based on Hidden Markov Modeling] <i>Biophys. J.</i> 2004 <b>86(3)</b>:1488-501 Qin,F., Auerbach,A. &amp; Sachs,F. [http://www.biophysj.org/cgi/content/abstract/79/4/1915 A Direct Optimization Approach to Hidden Markov Modeling for Single Channel Kinetics.] <i>Biophys. J.</i> 2000 <b>79:</b> 1915-1927 Qin,F., Auerbach,A. &amp; Sachs,F. [http://www.biophysj.org/cgi/content/abstract/79/4/1928 Hidden Markov Modeling for Single Channel Kinetics with Filtering and Correlated Noise.] <i>Biophys. J.</i> 2000 <b>79:</b> 1928-1944. Qin, F., A. Auerbach, and F. Sachs (1997) Maximum likelihood estimation of aggregated Markov processes. <i> Proceedings of the Royal Society B </i><b>264:</b>375-383. Qin, F., A. Auerbach, and F. Sachs (1996) Estimating single-channel kinetic parameters from idealized patch clamp data containing missed events. <i> Biophysical Journal </i> <b>70:</b>264-280. <br> [http://www.biophysj.org/cgi/content/abstract/70/1/264 (abstract)] (scanned pages : [http://www.qub.buffalo.edu/Publications/mil_264.bmp 264] [http://www.qub.buffalo.edu/Publications/mil_265.bmp 265] [http://www.qub.buffalo.edu/Publications/mil_266.bmp 266] [http://www.qub.buffalo.edu/Publications/mil_267.bmp 267] [http://www.qub.buffalo.edu/Publications/mil_268.bmp 268] [http://www.qub.buffalo.edu/Publications/mil_269.bmp 269] [http://www.qub.buffalo.edu/Publications/mil_270.bmp 270] [http://www.qub.buffalo.edu/Publications/mil_271.bmp 271] [http://www.qub.buffalo.edu/Publications/mil_272.bmp 272] [http://www.qub.buffalo.edu/Publications/mil_273.bmp 273] [http://www.qub.buffalo.edu/Publications/mil_274.bmp 274] [http://www.qub.buffalo.edu/Publications/mil_275.bmp 275] [http://www.qub.buffalo.edu/Publications/mil_276.bmp 276] [http://www.qub.buffalo.edu/Publications/mil_277.bmp 277] [http://www.qub.buffalo.edu/Publications/mil_278.bmp 278] [http://www.qub.buffalo.edu/Publications/mil_279.bmp 279] [http://www.qub.buffalo.edu/Publications/mil_280.bmp 280]) == Markov Theory == [http://pespmc1.vub.ac.be/asc/Markov_chain.html Defintion of a Markovian Chain] from the Web Dictionary of Cybernetics and Systems [http://www-groups.dcs.st-and.ac.uk/~history/Mathematicians/Markov.html A brief biography of Andrei Andreyevich Markov] [http://www.qub.buffalo.edu/Publications/milescu03thesis.doc Applications of Hidden Markov Models to Single Molecule and Ensemble Data Analysis] by Lorin Milescu. Definition and analysis of several QuB algorithms. A recent paper on microscopic reversibility, similar to the technique in the 1996 MIL paper : <br> Colquhoun, D., Dowsland, K., Beato, M. &amp; Plested, A. [http://www.ucl.ac.uk/Pharmacology/dc-bits/colquhoun-biophysj-04.pdf How to Impose Microscopic Reversibility in Complex Reaction Mechanisms] Biophys. J. 2004 86: 3510-3518 Paul H. Edelman & Jim Chen, “Duel Diligence:” Second Thoughts about the Supremes as the Sultans of Swing, 70 S. Cal. L. Rev. 219 (1996), 227 <br> Edelman and Chen use Markovian theory to analyse the outcome of Supreme Court decisions. [http://www.eblong.com/zarf/markov/ Fun with Markov Chains] Simulated literature using word transition probabilities from classic texts. [http://scholar.lib.vt.edu/theses/available/etd-61098-131249/unrestricted/dmfetd.pdf Markov Chains as Tools for Jazz Improvisation Analysis] of John Coltrane's <i>Giant Steps</i> {|class="wikitable" | style="width:100%" | border=1 | cellspacing=0 |-style="text-align:center" |[[Glossary|Prev: Glossary]] |[[Outline]] |[[Research using QuB|Next: Research using QuB]] |}

Return to Main Page.