Papers about QuB
From QuB
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Publications
Milescu, L.S., T. Yamanishi, K. Ptak, M.Z. Mogri, and J.C. Smith. 2008. Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp. Biophysical J. 95(1):66-87.
Milescu, L.S., A. Yildiz, P.R. Selvin, and F. Sachs. 2006. Extraction of dwell-time sequences from processive molecular motor data. Biophysical J. 91(9):3135-3150.
Milescu, L.S., A. Yildiz, P.R. Selvin, and F. Sachs. 2006. Maximum likelihood estimation of molecular motor kinetics from staircase data. Biophysical J. 91(4):1156-1168.
Milescu, L.S., G. Akk, and F. Sachs. 2005. Maximum likelihood estimation of ion channel kinetics from macroscopic currents. Biophysical J. 88(4):2494-2515.
Li, L., Qin, F. 2004. Model-Based Fitting of Single-Channel Dwell-Time Distributions Biophys J. 87(3):1657-71.
Qin, F. 2004. Restoration of Single-Channel Currents Using the Segmental k-Means Method Based on Hidden Markov Modeling Biophys. J. 2004 86(3):1488-501
Qin,F., Auerbach,A. & Sachs,F. A Direct Optimization Approach to Hidden Markov Modeling for Single Channel Kinetics. Biophys. J. 2000 79: 1915-1927
Qin,F., Auerbach,A. & Sachs,F. Hidden Markov Modeling for Single Channel Kinetics with Filtering and Correlated Noise. Biophys. J. 2000 79: 1928-1944.
Qin, F., A. Auerbach, and F. Sachs (1997) Maximum likelihood estimation of aggregated Markov processes. Proceedings of the Royal Society B 264:375-383.
Qin, F., A. Auerbach, and F. Sachs (1996) Estimating single-channel kinetic parameters from idealized patch clamp data
containing missed events. Biophysical Journal 70:264-280.
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Markov Theory
Defintion of a Markovian Chain from the Web Dictionary of Cybernetics and Systems
A brief biography of Andrei Andreyevich Markov
Applications of Hidden Markov Models to Single Molecule and Ensemble Data Analysis by Lorin Milescu. Definition and analysis of several QuB algorithms.
A recent paper on microscopic reversibility, similar to the technique in the 1996 MIL paper :
Colquhoun, D., Dowsland, K., Beato, M. & Plested, A.
How to Impose Microscopic Reversibility in Complex Reaction Mechanisms Biophys. J. 2004 86: 3510-3518
Paul H. Edelman & Jim Chen, “Duel Diligence:” Second Thoughts about the
Supremes as the Sultans of Swing,
70 S. Cal. L. Rev. 219
(1996), 227
Edelman and Chen use Markovian theory to analyse the outcome of Supreme Court decisions.
Fun with Markov Chains Simulated literature using word transition probabilities from classic texts.
Markov Chains as Tools for Jazz Improvisation Analysis of John Coltrane's Giant Steps
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